143items
The National Research Platform: Stretched, Multi-Tenant, Scientific Kubernetes Cluster
Weitzel, D., Graves, A., Albin, S., Zhu, H., Wuerthwein, F., Tatineni, M., Mishin, D., Khoda, E., Sada, M., Smarr, L. and DeFanti, T., 2025. The National Research Platform: Stretched, Multi-Tenant, Scientific Kubernetes Cluster. In Practice and Experience in Advanced Research Computing 2025: The Power of Collaboration (pp. 1-5).
Longitudinal flux balance analyses of a patient with episodic colonic inflammation reveals microbiome metabolic dynamics
Basile, A., Heinken, A., Hertel, J., Smarr, L., Li, W., Treu, L., Valle, G., Campanaro, S. and Thiele, I., 2023. Longitudinal flux balance analyses of a patient with episodic colonic inflammation reveals microbiome metabolic dynamics. Gut microbes , 15 (1), p.2226921.
Towards a Dynamic Composability Approach for using Heterogeneous Systems in Remote Sensing
Altintas, I., Perez, I., Mishin, D., Trouillaud, A., Irving, C., Graham, J., Tatineni, M., DeFanti, T., Strande, S., Smarr, L. and Norman, M.L., 2022, October. Towards a dynamic composability approach for using heterogeneous systems in remote sensing. In 2022 IEEE 18th International Conference on e-Science (e-Science) (pp. 336-345). IEEE.
Gastrointestinal Surgery for Inflammatory Bowel Disease Persistently Lowers Microbiome and Metabolome Diversity
X. Fang, Y. Vázquez-Baeza, E. Elijah, F. Vargas, G. Ackermann, G. Humphrey, R. Lau, K. C. Weldon, J. G. Sanders, M. Panitchpakdi, C. Carpenter, A. K. Jarmusch, J. Neill, A. Miralles, P. Dulai, S. Singh, M. Tsai, A. D. Swafford, L. Smarr, D. L. Boyle, B. O. Palsson, J. T. Chang, P. C. Dorrestein, W. J. Sandborn, R. Inflammatory Bowel Diseases, 27, 603–616 (2021). https://doi.org/10.1093/ibd/izaa262
De Novo Peptide Sequencing Reveals Many Cyclopeptides in the Human Gut and Other Environments
B. Behsaz, . Mohimani, A. Gurevich, A. Prjibelski, M. F. Fisher, L. Smarr, P. C. Dorrestein, J. S. Mylne, and P. A. Pevzner. Cell Systems 40. (2020).
Phylogenomics of 10,575 Genomes Reveals Evolutionary Proximity Between Domains Bacteria and Archaea
Q. Zhu, U. Mai, W. Pfeiffer, S. Janssen, F. Asnicar, J. G. Sanders, P. Belda-Ferre, G. A. Al-Ghalith, E. Kopylova, D. McDonald, T. Kosciolek, J. B. Yin, S. Huang, N. Salam, J.-Y. Jiao, Z. Wu, Z. Z. Xu, K. Cantrell, Y. Yang, Erfan Sayyari, M. Rabiee, J. T. Morton, S. Podell, D. Knights, W.-J. Li, C. Huttenhower, N. Segata, L. Smarr, S. Mirarab, R. Knight. Nature Communications 10, 5477. (2019).
Optimizing sequencing protocols for leaderboard metagenomics by combining long and short reads
Jon G. Sanders, Sergey Nurk, Rodolfo A. Salido, Jeremiah Minich, Zhenjiang Z. Xu, Qiyun Zhu, Cameron Martino, Marcus Fedarko, Timothy D. Arthur, Feng Chen, Brigid S. Boland, Greg C. Humphrey, Caitriona Brennan, Karenina Sanders, James Gaffney, Kristen Jepsen, Mahdieh Khosroheidari, Cliff Green, Marlon Liyanage, Jason W. Dang, Vanessa V. Phelan, Robert A. Quinn, Anton Bankevich, John T. Chang, Tariq M. Rana, Douglas J. Conrad, William J. Sandborn, Larry Smarr, Pieter C. Dorrestein, Pavel A. Pevzner & Rob Knight, Genome Biology 20, Article: 226, (2019).
The Evolution of Bits and Bottlenecks in a Scientific Workflow Trying to Keep up With Technology: Accelerating 4D Image Segmentation Applied to NASA data
S. Sellars, J. Graham, D. Mishin, K. Marcus, I. Altintas, T. DeFanti, L. Smarr, C. Crittenden, F. Wuerthwein, J. Tatar, P. Nguyen, E. Shearer, S. Sorooshian, M. Ralph, in Proceedings of the 15th IEEE International eScience Conference (2019).
Workflow-Driven Distributed Machine Learning in CHASE-CI: A Cognitive Hardware and Software Ecosystem Community Infrastructure
I. Altintas, K. Marcus, I. Nealey, S. Sellars, J. Graham, D. Mishin, J. Polizzi, D. Crawl, T. DeFanti, L. Smarr. In Proceedings of the IEEE International Symposium on Parallel and Distributed Processing Symposium Workshops (IPDPSW) (2019).
Evaluating Metagenomic Prediction of the Metaproteome in a 4.5-Year Study of a Patient with Crohn’s Disease
R. H. Mills, Y. Vázquez-Baeza, Q. Zhu, L. Jiang, J. Gaffney, G. Humphrey, L. Smarr, R. Knight, D. J. Gonzalez. mSystems 4:e00337-18. (2019).
Microbiome 101: Studying, Analyzing, and Interpreting Gut Microbiome Data for Clinicians
C. Allaband, D. McDonald, Y. Vázquez-Baeza, J. J. Minich, A. Tripathi, D. Brenner, R. Loomba, L. Smarr, W. J. Sandborn, B. Schnabl, P. Dorrestein, A. Zarrinpar, R. Knight. Clinical Gastroenterology and Hepatology 17, 218-230. (2019).
Extracting Insights On The Dynamic Health-Disease Transitions In The Human Gut Microbiome
Smarr, Larry, Marc Jaffrey, Michael Dushkoff, Brynn Taylor, Pilar Ackerman, Mehrdad Yezdani, and Weizhong Li. “Extracting Insights On The Dynamic Health-Disease Transitions In The Human Gut Microbiome” (2018).
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Metagenomics-Based, Strain-Level Analysis of Escherichia coli From a Time-Series of Microbiome Samples From a Crohn’s Disease Patient
X. Fang, J. M. Monk, S. Nurk, M. Akseshina, Q. Zhu, C. Gemmell, C. Gianetto-Hill, N. Leung, R. Szubin, J. Sanders, P. L. Beck, W. Li, W. J. Sandborn, S. D. Gray-Owen, R. Knight, E. Allen-Vercoe, B. O. Palsson, L. Smarr. Frontiers in Microbiology. Vol 9, article 2559. (2018).
Are microbiome studies ready for hypothesis-driven research?
A. Tripathi, C. Marotz, A. Gonzalez, Y. Vázquez-Baeza, S. J. Song, A. Bouslimani, D. McDonald, Q. Zhu, J. G. Sanders, L. Smarr, P. C. Dorrestein, R. Knight, Current Opinion Microbiology 44, 61-69. (2018).
The Pacific Research Platform: Making High-Speed Networking a Reality for the Scientist
L. Smarr, C. Crittenden, T. DeFanti, J. Graham, D. Mishin, R. Moore, P. Papadopoulos, F. Würthwein. In PEARC ’18: Proceedings of the Practice and Experience on Advanced Research Computing, pp. 1-8. (2018).
Escherichia coli B2 Strains Prevalent in Inflammatory Bowel Disease Patients Have Distinct Metabolic Capabilities that Enable Colonization of Intestinal Mucosa
X. Fang, J. M. Monk, N. Mih, B. Du, A. Sastry, E. Kavvas, Y. Seif, L. Smarr, B. O. Palsson. BMC Systems Biology, 12, 66. (2018).
American Gut: an Open Platform for Citizen Science
D. McDonald, E. Hyde, J. W. Debelius, J. T. Morton, A. Gonzalez, G. Ackermann, A. A. Aksenov, B. Behsaz, C. Brennan, Y. Chen, L. DeRight Golda, P. C. Dorrestein, R. R. Dunn, A. Fahimipour, J. Gaffney, J. A. Gilbert, G. Gogul, J. L. Green, P. Hugenholtz, G. Humphrey, C. Huttenhower, M. A. Jackson, S. Janssen, D. V. Jeste, L. Jiang, S. T. Kelley, D. Knights, T. Kosciolek, J. Ladau, J. Leach, C. Marotz, D. Meleshk, A. V. Melnik, J. L. Metcalf, H. Mohimani, E. Montassier, J. Navas-Molina, T. T. Nguyen, S. Peddada, P. Pevzner, K. S. Pollard, G. Rahnavard, A. Robbins-Pianka, N. Sangwan, J. Shorenstein, L. Smarr, S. J. Song, T. Spector, A. D. Swafford, V. G. Thackray, L. R. Thompson, A. Tripathi, Y. Vázquez-Baeza, A. Vrbanac, P. Wischmeyer, E. Wolfe, Q. Zhu, The American Gut Consortium, Rob Knight. mSystems 3:e00031-18. (2018).
Creating a 3D microbial and chemical snapshot of a human habitat
C. A. Kapono, J. T. Morton, A. Bouslimani, A. V. Melnik, K. Orlinsky, T. Luzzatto Knaan, N. Garg, Y. Vázquez-Baeza, Iv. Protsyuk, S. Janssen, Q. Zhu, T. Alexandrov, L. Smarr, R. Knight, P. C. Dorrestein. Altmetric: Nature Scientific Reports, vol.8: 3669. (2018).
Tracking Human Gut Microbiome Changes Resulting from a Colonoscopy
L. Smarr, E. R. Hyde, D. McDonald, W. J. Sandborn, R. Knight. Methods of Information in Medicine. 56(6):442-447 (2017).
Bringing the Dynamic Microbiome to Life with Animations
Y. Vazquez-Baeza, A. Gonzalez, L. Smarr, D. McDonald, J. T. Morton, J. A. Navas-Molina, and R. Knight. Cell Host and Microbe, vol. 21, pp 7-10. (2017).
Using Machine Learning to Identify Major Shifts in Human Gut Microbiome Protein Family Abundance in Disease
Proceedings Of The 2016 IEEE International Conference On Big Data. (2016) M. Yazdani, B. C. Taylor, J. W Debelius, W. Li, R. Knight, and L. Smarr
Using Topological Data Analysis to find discrimination between microbial states in human microbiome data
Mehrdad Yazdani, Larry Smarr and Rob Knight. (2016).
Using Pairwise Difference Features to Measure Temporal Changes in the Microbial Ecology
M. Yazdani, L. Smarr. 2015 IEEE International Conference on Big Data. IEEE. 10/29/2015.
Towards an Integrated Cyberinfrastructure for Scalable Data-driven Monitoring, Dynamic Prediction and Resilience of Wildfires
Ilkay Altintas, Jessica Block, Raymond de Callafon, Daniel Crawl, Charles Cowart, Amarnath Gupta, Mai Nguyen, Hans-Werner Braun, Jurgen Schulze, Michael Gollner, Arnaud Trouve, Larry Smarr. Procedia Computer Science, vol. 51, pp 1633-1642. (2015).
Toward More Transparent And Reproducible Omics Studies Through A Common Metadata Checklist And Data Publications – OMICS A Journal of Integrative Biology
Eugene Kolker, Vural Ozdemir, Lennart Martens, William Hancock, Gordon Anderson, Nathaniel Anderson, Sukru Aynacioglu, Ancha Baranova, Shawn R Campagna, Rui Chen, John Choiniere, Stephen P Dearth, Wu-Chun Feng, Lynnette Ferguson, Geoffrey Fox, Dmitrij Frishman, Robert Grossman, Allison Heath, Roger Higdon, Mara H Hutz, Imre Janko, Lihua Jiang, Sanjay Joshi, Alexander Kel, Joseph W Kemnitz, Isaac S Kohane, Natali Kolker, Doron Lancet, Elaine Lee, Weizhong Li, Andrey Lisitsa, Adrian Llerena, Courtney MacNealy-Koch, Jean-Claude Marshall, Paola Masuzzo, Amanda May, George Mias, Matthew Monroe, Elizabeth Montague, Sean Mooney, Alexey Nesvizhskii, Santosh Noronha, Gilbert Omenn, Harsha Rajasimha, Preveen Ramamoorthy, Jerry Sheehan, Larry Smarr, Charles V Smith, Todd Smith, Michael Snyder, Srikanth Rapole, Sanjeeva Srivastava, Larissa Stanberry, Elizabeth Stewart, Stefano Toppo, Peter Uetz, Kenneth Verheggen, Brynn H Voy, Louise Warnich, Steven W Wilhelm, Gregory Yandl. Omics, Vol 18, pp 10-14. (2014).
Large Memory High Performance Computing Enables Comparison Across Human Gut Microbiome of Patients with Autoimmune Diseases and Healthy Subjects
Published in the XSEDE 2013 Proceedings of the Conference on Extreme Science and Engineering Discovery Environment: Gateway to Discovery. Article No. 25 Sitao Wu, Weizhong Li, Larry Smarr, Karen Nelson, Shibu Yooseph, Manolito Torralba
Quantifying Your Body: A How-to Guide From A Systems Biology Perspective – Biotechnology Journal
Biotechnology Journal. pages 980 – 991. (2012).
The Future Of The CAVE – Open Engineering
T. A. DeFanti, D. Acevedo, R. A. Ainsworth, M. D. Brown, S. Cutchin, G. Dawe, K. Doerr, A. Johnson, C. Knox, R. Kooima, F. Kuester, J. Leigh, L. Long, P. Otto, V. Petrovic, K. Ponto, A. Prudhomme, R. Rao, L. Renambot, D. J. Sandin, J. P. Schulze, L. Smarr, M. Srinivasan, P. Weber, G. Wickham. Cent. Eur. J. Open Eng Vol. 1, Issue 1 (2011).
The Emergence Of A Planetary-Scale Collaboratory For Data-Intensive Research
Larry Smarr. In Ian Piumarta and Kim Rose (eds.),”Points of View — a tribute to Alan Kay”, Viewpoints Research Institute, May 2010, pp. 79–96. ISBN 978-0-9743131-1-5.
The Growing Interdependence Of The Internet And Climate Change – IEEE Internet Computing Magazine
Larry Smarr. The Growing Interdependence of the Internet and Climate Change. IEEE Internet Computing, January/February 2010, pp. 18–20.
Project GreenLight: Optimizing Cyberinfrastructure For A Carbon-Constrained World – IEEE Computer
L. Smarr, IEEE Computer, volume 43, number 1, pp.22-27 (2010)
Participatory sensing: applications and architecture [Internet Predictions]
D. Estrin, K. M. Chandy, R. M. Young, L. Smarr, A. Odlyzko, D. Clark, V. Reding, T. Ishida, S. Sharma, V. Cerf, U. Holzle, L. A. Barroso, G. Mulligan, A. Hooke, C. Elliott in IEEE Internet Computing, 14, 12-42 (2010).
Campuses as Living Laboratories for the Greener Future
B. St. Arnaud, L. Smarr, J. Sheehan, and T. DeFanti, [invited article] EDUCAUSE Review, 44, 14-33 (2009)
Climate Change and Higher Education – EDUCAUSE Review
B. St. Arnaud, L. Smarr, J. Sheehan, and T. DeFanti, EDUCAUSE Review, Volume 44, pp. 14-33 Published: Friday, October 30, 2009
The OptIPuter and Its Applications
Summer Topical Meeting, 2009 on Future Global Networks. LEOSST ’09. IEEE Lasers and Electro-Optics Society (LEOS), pp 151-152 (2009)
The OptIPuter And Its Applications – IEEE LEOS
IEEE Lasers and Electro-Optics Society (LEOS) Summer 2009 Topical Meeting on Future Global Networks, July 22, 2009, pp. 151-152
The OptIPortal, a scalable visualization, storage, and computing interface device for the OptiPuter
T. DeFanti, J. Leigh, L. Renambot, B. Jeong, A. Verlo, L. Long, M. Brown, D. Sandin, V. Vishwanath, Q. Liu, M. Katz, P. Papadopoulos, J. Keefe, G. Hidley, G. Dawe, I.Kaufman, B. Glogowski, K.-W. Doerr, R. Singh, J. Girado, J. Schulze, F. Kuester, L. Smarr, Future Generation Computer Systems, Volume 25, Issue 2, pp. 114-123. February 2009.
Infrastructure for eScience and eLearning in Higher Education
Lazowska, E., Lee, P., Elliott, C., & Smarr, L. Infrastructure for eScience and eLearning in Higher Education. 12/12/2008. Computing Community Consortium.
An Intelligent Infrastructure Initiative For Australian Society And Homeland Security
October 20, 2008 Professor Larry Smarr, University of California, San Diego Director, California Institute for Telecommunications and Information Technology 2008 Leadership Dialogue Scholar.
The StarCAVE, A Third-generation CAVE And Virtual Reality OptIPortal
Thomas A. DeFanti, Gregory Dawe, Daniel J. Sandin, Jurgen P. Schulze, Peter Otto, Javier Girado, Falko Kuester, Larry Smarr, Ramesh Rao. The StarCAVE, a third-generation CAVE and virtual reality OptIPortal. Future Generation Computer Systems, 25, 169–178 (2009).
Special Section: OptIPlanet – The OptIPuter Global Collaboratory
L. Smarr, M. Brown, C. de Laat, Future Generation Computer Systems, Volume 25, pp. 109-113 (2009)
Building an OptIPlanet collaboratory to support microbial metagenomics
L. Smarr, P. Gilna, P. Papadopoulos, T. DeFanti, G. Hidley, J. Wooley, E. V. Armbrust, F. Rohwer, E. Frost, Future Generation Computer Systems, Volume 25, Issue 2, pp. 124-131. July 2008.
Quartzite: A Campus-Scale Hybrid Networking Infrastructure
P. Papadopoulos, B. Dunne, L. Smarr, J. Ford, S. Fainman, Proceedings of the 2008 Conference on Optical Fiber Communication/National Fiber Optic Engineers Conference, San Diego, CA, 2008, pp. 1-3. (2008).
CAMERA: A Community Resource for Metagenomics
R. Seshadri, SA Kravitz, L Smarr , Gilna P, M Frazier, PLoS Biol 5(3): e75.(2007).
CineGrid: A New Cyberinfrastructure for High Resolution Media Streaming
L. Smarr, L. Herr, T. DeFanti, N. Ohta, P. Otto, [invited article] Cyberinfrastructure Tech. Watch Quart., v3,#2. (2007).
Riding the Light Towards New Science – Nature Photonics
Smarr, Larry. “Riding the light towards new science.” nature photonics 1, no. 3 (2007): 133-135.
International Real-Time Streaming Of 4K Digital Cinema
Shimizu, T., Shirai, D., Takahashi, H., Murooka, T., Obana, K., Tonomura, Y., Inoue, T., Yamaguchi, T., Fujii, T., Ohta, N., Ono, S., Aoyama, T., Herr, L., van Osdol, N., Wang, X., Brown, M., DeFanti, T., Feld, R., Balser, J., Morris, S., Henthorn, T., Dawe, G., Otto, P., Smarr, L., Future Generation Computer Systems, Volume 22, Elsevier, pp. 929-939 (2006).
Grid Networks: Enabling Grids with Advanced Communication Technology
Foreword by Larry Smarr – (Franco Travostino, Joe Mambretti, Gigi Karmous-Edwards, editors), John Wiley & Sons, pp. xxv – xxvi. August 2006.
The OptIPuter: A National and Global-Scale Cyberinfrastructure for Enabling LambdaGrid Computing
M. Brown, L. Smarr, T. DeFanti, J. Leigh, M. Ellisman, P. Papadopoulos, TeraGrid ’06 Proceedings, Indianapolis, IN, June 12-15, (2006).
The OptIPuter: High-Performance, QoS-Guaranteed Network Service For Emerging E-Science Applications
N. Taesombut, F. Uyeda, A.A. Chien, L. Smarr, T.A. DeFanti, P. Papadopoulos, J. Leigh, M. Ellisman, J. Orcutt. IEEE Communications, 4, 38- 45 (2006).
IGrid 2005: The Global Lambda Integrated Facility
L. Smarr, T. A. DeFanti, M. D. Brown and C. de Laat, Future Generation Computer Systems, Vol. 22, Elsevier, pp. 849-851 (2006).
LOOKING: Cyberinfrastructure For Ocean Observatories
By A.D. Chave, M. Arrott, L. Smarr, J.A. Orcutt, E. Lazowska, J.R. Delaney, M. Abbott Proceedings of SSC’06- the Fourth International Workshop on Scientific Use of Submarine Cables and Related Technologies held in Dublin Castle, Ireland, Feb 8-10, 2006
The Cyberinfrastructure Backplane: The Jump To Light Speed – Introduction
Larry Smarr and Phil Papadopoulos, Guest Editors, Cyberinfrastructure Technology Watch (CTWatch) Quarterly, vol. 1, #2 May 2005, pps 2-4. (2005).
The OptIPuter, Quartzite, And Starlight Projects: A Campus To Global-Scale Testbed For Optical Technologies Enabling LambdaGrid Computing
Larry Smarr, Joe Ford, Phil Papadopoulos, Shaya Fainman, Thomas DeFanti, Maxine Brown, Jason Leigh, Optical Fiber Communication Conference & Exposition and the National Fiber Optic Engineers Conference (OFC/NFOEC) 2005, Anaheim, California, March 6-11, 2005, CD ROM.
A Framework For Middleware Supporting Real-Time Wide-Area Distributed Computing
Kane Kim, Steve Jenks, Larry Smarr, Andrew Chien, and Liang-Chen Zheng, Proceedings of 10th IEEE International Workshop on Object-Oriented Real-Time Dependable Systems (WORDS 2005) pp. 231-240. Sedona, AZ, February 2-4, 2005.
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A Management Concept For Ocean Observatories Based On Web Services
Alan Chave, Bill St. Arnaud, Mark Abbott, John Delaney, Ron Johnson, Ed Lazowska, Andrew Maffei, John Orcutt, and Larry Smarr. In Oceans ’04, 2187-2193. (2004).
The Emerging Role Of Biogrids
Mark Ellisman, Michael Brady, David Hart, Fang-Pang Lin, Matthias Muller, Larry Smarr, Comm. ACM, 47 (11) 52-57 (2004).
An Integrated Approach To Ocean Observatory Data Acquisition/Management And Infrastructure Control Using Web Services
Bill St. Arnaud, Alan Chave, Andrew Maffei, Ed Laszowka, Larry Smarr, Ganesh Gopalan, Mar. Tech. Soc. J., 38, 155-163, 2004.
The OptIPuter: A New Approach To Volume Visualization Of Large Seismic Datasets
Graham Kent, John Orcutt, Larry Smarr, Jason Leigh, Atul Nayak, Debbie Kilb, L. Renambot, S. Venkataraman, Tom DeFanti, Y. Fialko, Phil Papadopoulos, Greg Hidley, David Hutches, Maxine Brown, Ocean Technology Conference, May 2004.
The Use Of E-Science Grids To Support ORION
Larry Smarr. In International Science Planning Workshop on the Dynamics of Earth and Ocean Systems (DEOS): Ocean Research Interactive Observatory Networks (ORION), sponsored by the National Science Foundation (NSF) and the Natural Science and Engineering Research Council (Canada), January 4-8, 2004, Puerto Rico.
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The OptIPuter
Larry Smarr, Andrew Chien, Tom DeFanti, Jason Leigh, Philip Papadopoulos, Comm. ACM, 46 (11) 58-67 (2003).
Teleimmersion and Visualization with the OptIPuter
T. A. DeFanti, J. Leigh, M. D. Brown, D. J. Sandin, O.Yu, Chong Zhang, R. Singh, E. He, J. Alimohideen, N. K. Krishnaprasad, R. Grossman, M. Mazzucco, L. Smarr, M. Ellisman, P. Papadopoulos, A. Chien, J. Orcutt, in Telecommunication, Teleimmersion and Telexistence: Proceedings of the 12th International Conference on Artificial Reality and Telexistence, Susumu Tachi, editor, Ohmsha/IOS Press, 25-71 (2002).
The Emergence Of Grid Information Infrastructures
Larry Smarr, Chapter 23 in AAAS Science and Technology Yearbook 2000, editors Albert H. Teich, Stephen D. Nelson, Ceilia McEnaney, Stephen J. Lita.
Supercomputers: Directions In Technology, Architecture, And Applications
Larry Smarr, in Proceedings of Supercomputing ’98 in Mannheim, Germany (1998).
Grids in Context
L. Smarr, Chapter 1 in The Grid: A Blueprint for the New Computing Infrastructure edited by I. Foster and C. Kesselman (MKP) (1998).
Gravitational Wave Extraction and Outer Boundary Conditions by Perturbative Matching
A. M. Abrahams, L. Rezzolla, M. E. Rupright, A. Anderson, P. Anninos, T. W. Baumgarte, N. T. Bishop, S. R. Brandt, J. C. Browne, K. Camarda , M. W. Choptuik, G. B. Cook, C. R. Evans, L. S. Finn, G. Fox, R. G’omez, T. Haupt, M. F. Huq, L. E. Kidder, S. Klasky, P. Laguna , W. Landry, L. Lehner, J. Lenaghan, R. L. Marsa, J. Masso, R. A. Matzner, S. Mitra, P. Papadopoulos, M. Parashar, F. Saied, P. E. Saylor, M. A. Scheel, E. Seidel, S. L. Shapiro, D. Shoemaker, L. Smarr, B. Szil’agyi, S. A. Teukolsky, M. H. P. M. van Putten, P. Walker, J. Winicour, J. W. York Jr., Physical Review Letters, 80, 1812 (1998).
Stable characteristic evolution of generic 3-dimensional single-black-hole spacetimes
R. Gomez, L. Lehner, R. L. Marsa, J. Winicour, A. M. Abrahams, A. Anderson, P. Anninos, T. W. Baumgarte, N. T. Bishop, S. R. Brandt, J. C. Browne, K. Camarda , M. W. Choptuik, R. R. Correl, G. B. Cook, C. R. Evans, L. S. Finn, G. C. Fox, T. Haupt, M. F. Huq, L. E. Kidder, S. A. Klasky, P. Laguna, W. Landry, J. Lenaghan, J. Masso, R. A. Matzner, S. Mitra, P. Papadopoulos, M. Parashar, L. Rezzolla, M. E. Rupright, F. Saied, P. E. Saylor, M. A. Scheel, E. Seidel, S. L. Shapiro, D. Shoemaker, L. Smarr, B. Szilagyi, S. A. Teukolsky, M. H. P. M. van Putten, P. Walker, J. W. York Jr., Physical Review Letters, 80, 3915-3918 (1998).
Boosted three-dimensional black-hole evolutions with singularity excision
G. B. Cook, M. F. Huq, S. A. Klasky, M. A. Scheel, A. M. Abrahams, A. Anderson, P. Anninos, T. W. Baumgarte, N. T. Bishop, S. R. Brandt, J. C. Browne, K. Camarda, M. W. Choptuik, C. R. Evans , L. S. Finni G. C. Fox, R. G´omez, T. Haupt, L. E. Kidder, P. Laguna, W. Landry, L. Lehner, J. Lenaghan , R. L. Marsa, J. Masso, R. A. Matzner, S. Mitra, P. Papadopoulos, M. Parashar, L. Rezzolla, M. E. Rupright , F. Saied, P. E. Saylor, E. Seidel, S. L. Shapiro, D. Shoemaker, L. Smarr, W. M. Suen , B. Szil´agyi, S. A. Teukolsky, Physical Review Letters, 80, 2512-2516 (1998).
Computational Infrastructure: Toward the 21st Century
L. Smarr, CACM 40(11): 28-32 (1997).
A Nationwide Parallel Computing Environment
K. Kennedy, C. F. Bender, J. W. D. Connolly, J. L. Hennessy, M. K. Vernon, L. Smarr, CACM 40(11): 62-72 (1997).
When Black Holes Collide
Peter Anninos, David Hobill, Edward Seidel, Larry Smarr, and Wai-Mo Suen, in Proceedings of the Sixth Canadian Conference on General Relativity and Relativistic Astrophysics, Fields Institute Communications (1997).
Head-on Collisions of Two Black Holes
D. W. Hobill, P. Anninos, E. Seidel, L. Smarr, W.-M. Suen, in Computational Astrophysics; 12th Kingston Meeting on Theoretical Astrophysics; ASP Conference Series #123, edited by D. A. Clarke and M. J. West., p. 314 (1997).
Building a Scalable America
L. Smarr, Lecture Notes in Computer Science, 1082, 35-42 (1996).
Geometry of a Black Hole Collision – Science Magazine
Richard Matzner, Edward Seidel, Stuart L. Shapiro, Larry Smarr, Wai-Mo Suen, Saul Teukolsky, Jeff Winicuor, Science 270, 941. (1995).
The Head-On Collision Of Two Equal Mass Black Holes
Peter Anninos, David Hobill, Edward Seidel, Larry Smarr, and Wai-Mo Suen. Physical Review D15, 52, 2044. (1995).
Dynamics of Apparent and Event Horizons
P. Anninos, D. Bernstein, S. Brandt, J. Libson, Joan Masso, E. Seidel, L. Smarr, W.-M. Suen, and P. Walker. Physical Review Letters, 74, 630. (1995).
Event Horizons Of Numerical Black Holes
Peter Anninos, David Bernstein, Steve Brandt, Joseph Libson, Joan Masso, Ed Seidel, Larry Smarr, and Paul Walker, Proceedings of the 7th Marcel Grossmann Meeting on General Relativity, Ed. R. Ruffini and M. Keiser, World Scientific, Singapore. (1995).
Oscillating Apparent Horizons In Numerically Generated Spacetimes
Peter Anninos, David Bernstein, Steve Brandt, David Hobill, Ed Seidel, Larry Smarr, Australian Journal of Physics, 48, 1027-43 (1995).
Numerically Generated Axisymmetric Black Hole Spacetimes: Numerical Methods and Code Tests
D. Bernstein, D. Hobill, E. Seidel, L. Smarr, and J. Towns, Physical Review D15, 50, 5000, (1994).
Initial Data for the Black Hole plus Brill Wave Spacetime
D. Bernstein, D. Hobill, E. Seidel and L. Smarr. Physical Review D15, 50, 3760, (1994).
Dynamics of Black Hole Apparent Horizons
Peter Anninos, David Bernstein, Steven R. Brandt, David Hobill, Edward Seidel, and Larry Smarr, Physical Review D15, 50, 3801. (1994).
The Collision of Two Black Holes
P. Anninos, D. Hobill, E. Seidel, and L. Smarr, and W.-M. Suen, Physical Review Letters, 71, 2851 (1993).
Visualizing Black Hole Space-times
Anninos, P., Bajuk, M., Seidel, E., Smarr, L., & Hobill, D. (1993). Visualizing black hole space-times. IEEE Computer Graphics and Applications , 13 (1), 13-14. https://dl.acm.org/doi/abs/10.5555/160673.160676es
Supercomputing And The Transformation Of Science
William J. Kaufmann III, Larry L. Smarr. Scientific American Library, W. H. Freeman and Company, ISSN 1040-3213. Copyright 1993 by Scientific American Library.
Numerically Generated Black Hole Spacetimes: Interaction with Gravitational Waves
A. Abrahams, D. Bernstein, D. Hobill, E. Seidel, and L. Smarr, Physical Review D15, 45, 3544, (1992).
Visualization Captures the Imagination of Physicists
L. Smarr, Computers in Physics 5, 564 (1991).
Extraterrestrial Computing: Exploring The Universe With A Supercomputer
Chapter 8 of the book Very large Scale Computation in the 21st Century, edited by Jill P. Mesirov for the Society for Industrial and Applied Mathematics (SIAM), (1991)
Life After Internet: Making Room For New Applications – Information Technology Quarterly
Harvard University Information Technology Quarterly issue on Building an Information Infrastructure, Summer 1991, Vol. IX, No. 2, 12-21, with C. C. Catlett.
Astronomical Computing in the 1990s: The Bahcall Committee Report
W.H. Press and L. Smarr, Computers in Physics, 5, 180-190. (1991).
White Paper Of The Computing And Data Processing Panel
in Astronomy and Astrophysics Panel Reports, Astronomy and Astrophysics Survey Committee, National Research Council (National Academy Press: Washington D.C., 1991).
Supercomputing Opportunities For The Protein Sciences
In Protein Folding: Deciphering the Second Half of the Genetic Code, eds. L. M. Gierasch and J. King (AAAS: Washington D.C., 1990).
Shedding Light on Black Holes
Future Generation Computer Systems, 5, 225-242, 1989, (Elsevier Science Publishers B.V.: Amsterdam), with D. Hobill and D. Bernstein. (1989).
Black Hole Spacetimes: Testing Numerical Relativity
In Frontiers in Numerical Relativity, 57-73, 1989, ed. C. Evans, L. Finn, and D. Hobill (Cambridge University Press: Cambridge), with D. Bernstein and D. Hobill. (1989).
Supercomputing And Numerical Relativity: A Look At The Past, Present, and Future
In Frontiers in Numerical Relativity, 1-17, 1989, ed. C. Evans, L. Finn, and D. Hobill (Cambridge University Press: Cambridge), with D. Hobill.
Mednet: A Model For Applying Supercomputing Technologies To Medical Biostereometrics
Wrestler, F. A., Airth-Kindree, W., Lawrance, D. P., Smarr, L. L., & Herron, R. (1989, April). MEDnet: A model for applying supercomputing technologies to medical biostereometrics. In Biostereometrics’ 88 (Vol. 1030, pp. 245-249). SPIE.
Supercomputers, Workstations, And Visualization
In NCAR-41 Proceedings 1988, (Pechnomic Publishing Co., Inc.: Lancaster, PA). (1989).
The Computational Science Revolution: Technology, Methodology and Sociology
In High-Speed Computing: Scientific Applications and Algorithm Design, 1988, ed. R. B. Wilhelmson (Univ. of Illinois Press: Urbana).
Degenerate Dwarf Binaries as Promising, Detectable Sources of Gravitational Radiation
C. R. Evans, I. Iben, Jr., and L. Smarr, Astrophysical Journal, 323, 129-139 (1987).
Radio Jets As A Probe Of The Cooling Flow Environment
D. M. Sumi, M. L. Norman, L. L. Smarr, in Cooling Flows in Clusters and Galaxies, 1987, ed. A. C. Fabian (D. Reidel: Dordrecht) (1987).
Are The Inner Cores Of Galaxy Clusters Dominated By Dark Matter?
D. Sumi and L. Smarr, in Inner Space Outer Space: The Interface Between Cosmology and Particle Physics, 226-227, ed. E. Kolb, M. Turner, D. Lindley, K. Olive, and D. Seckel (Univ. of Chicago Press: Chicago) (1986).
New Paradigms For Black Hole Accretion From High-Resolution Supercomputer Experiments
J. F. Hawley and L. Smarr, in American Institute of Physics Conference Proceedings 144: Magnetospheric Phenomena in Astrophysics, 263-290, ed. R. I. Epstein and W. C. Feldman (American Institute of Physics: New York) (1986).
Numerical Relativistic Gravitational Collapse with Spatial Time Slices
C.R. Evans, L.L. Smarr and J.R. Wilson, in Astrophysical Radiation Hydrodynamics, 481-519, ed. K.-H. Winkler and M. Norman (Reidel: Dordrecht) (1986).
Hot Spots in Radio Galaxies: A Comparison with Hydrodynamic Beam Cap Simulations
M. Smith, M. Norman, K.-H. Winkler, and L. Smarr, Mon. Not. Royal Astronomical Soc., 214, 67-85 (1985).
An Approach to Complexity: Numerical Computations – Science Magazine
Science 26 Apr 1985: Vol. 228, Issue 4698, pp. 403-408 DOI: 10.1126/science.228.4698.403
Why Dominant Cluster Jets Are Different
D. Sumi and L. Smarr, in Physics of Energy Transport in Extragalactic Radio Sources, 168-181, ed. A. Bridle and J. Eilek (NRAO: Green Bank), (1985).
Knot Production And Jet Disruption Via Nonlinear Kelvin-Helmholtz Pinch Instabilities
In Physics of Energy Transport in Extragalactic Radio Sources, 150-168, 1985, ed. A. Bridle and J. Eilek (NRAO: Green Bank), with M. Norman and K.-H. Winkler. (1985).
The Missing Bulge Globular Clusters in M31: New Optical Candidates
A. Wirth, L. Smarr, and T. L. Bruno, Astrophysical Journal, 290, 140-153. (1985).
Fluid Dynamical Mechanisms for Knots in Astrophysical Jets
In Numerical Astrophysics, 88-126, ed. J. Centrella, J. LeBlanc, and R. Bowers (Jones and Bartlett: Boston), with K.-H. Winkler and M. Norman. (1985).
General Relativistic Magnetohydrodynamics
J. H. Sloan and L. L. Smarr, in Numerical Astrophysics, 52-68, ed. J. Centrella, J. LeBlanc, and R. Bowers (Jones and Bartlett: Boston) (1985).
Numerical Models of Fat Disks: New Scenarios for Fluid Accretion into Black Holes
J. Hawley and L. Smarr, in Numerical Astrophysics, 30-51, ed. J. Centrella, J. LeBlanc, and R. Bowers (Jones and Bartlett: Boston) (1985).
Computational Relativity: Numerical And Algebraic Approaches
In The Proceedings of the 10th International Conference on General Relativity and Gravitation, 163-183, ed. B. Berotti et al. (Reidel: Dordrecht). (1984).
Shocks, Interfaces and Patterns in Supersonic Jets
Smarr, L., Norman, M., Winkler, K.-H.. Physica 12D, 83-106. (1984).
A Numerical Study of Nonspherical Black Hole Accretion. II. Finite Differencing and Code Calibration
J. Hawley, J. R. Wilson, and L. Smarr, Astrophysical Journal Suppl., 55, 211-246 (1984).
General Relativistic Hydrodynamics And Accretion Physics: A Numerical Approach
J. F. Hawley and L. Smarr, In Problems of Collapse and Numerical Relativity, 256-269,, ed. D. Bancel and M. Signore (Reidel: Dordrecht) (1984).
A Numerical Study of Nonspherical Black Hole Accretion. I. Equations and Test Problems
J. Hawley, J. R. Wilson, and L. Smarr, Astrophysical Journal, 277, 296-311 (1984).
Bubbles, Jets and Clouds in Active Galactic Nuclei
M. D. Smith, L. Smarr, M. L. Norman, and J. R. Wilson, Astrophysical Journal, 264, 432-445 (1983).
Propagation and Morphology of Pressure-Confined Supersonic Jets
M. Norman, K.-H. Winkler, and L. Smarr, 227-251, in Astrophysical jets; Proceedings of the International Workshop, Turin, Italy, ed. A. Ferrari and A. G. Pacholczyk (D. Reidel: Dordrecht) (1983).
Gravitational waves and red shifts: A space experiment for testing relativistic gravity using multiple time-correlated radio signals
Gen. Rel. and Grav., 15, 129-163, with R. F. C. Vessot, C. A. Lundquist, R. Decker and T. Piran. (1983).
The Contributions of Bryce DeWitt to Classical General Relativity
Larry Smarr in Ahead of His Time: Bryce S. DeWitt. Essays on the Quantum Theory of Gravity in Honor of his 60th Birthday, 1984, ed. S. Christensen (Adam Hilger, Lmt.: Bristol, England).
Structure And Dynamics Of Supersonic Jets
Astron. & Astrophys., 113, 285-302, 1982, with M. Norman, K.-H. Winkler, and M. Smith.
The Extended Radio Source In The Center Of M31
R. M. Hjellming and L. Smarr, Astrophysical Journal Letters, 257, L13-L18 (1982).
Dumbbell Galaxies And Precessing Radio Jets
Astron. J., 87, 602-615, 1982, with J. S. Gallagher and A. Wirth.
Can the Twin-Exhaust Model Explain Radio Jets?
Nature, 293, 277-279, 1981, with M. D. Smith, J. R. Wilson, and M. L. Norman.
Hydrodynamical Formation Of Twin-Exhaust Jets
Ap. J., 247, 52-58, 1981, with M. L. Norman, M. D. Smith, and J. R. Wilson.
Rayleigh-Taylor Overturn In Supernova Core Collapse
L. Smarr, J. R. Wilson, R. T. Barton, and R. L. Bowers, Astrophysical Journal, 246, 515-525 (1981).
General Relativistic Hydrodynamics: The Comoving, Eulerian, And Velocity Potential Formalism
L. Smarr, C. Taub, and J. R. Wilson, in Essays in General Relativity: A Festschrift for Abraham Taub, ed. F. Tipler, (Academic Press) (1980).
Observations Of X-Ray Sources In M31
L. Van Speybroeck, A. Epstein, W. Forman, R. Giacconi, C., Jones, W. Liller, L. Smarr, Astrophysical Journal Letters, 234, L45-L49 (1979).
Sources Of Gravitational Radiation, Ed.
Edited by L. Smarr (Cambridge University Press) (1979).
Time Functions in Numerical Relativity: I. Marginally Bound Dust Collapse
D. Eardley and L. Smarr, Physical Review D19, 2239-2259 (1979).
Kinematical Conditions in the Construction of Spacetime
L. Smarr and J. W. York, Jr., Physical Review D17, 2529-2551 (1978).
Radiation Gauge in General Relativity
L. Smarr and J. W. York, Jr., Physical Review D17, 1945-1956 (1978).
Our Elastic Spacetime: Black Holes And Gravitational Waves
L. Smarr and W. H. Press American Scientist, 66, 72-79 (1978).
Spacetimes Generated By Computers: Black Holes With Gravitational Radiation
L. Smarr, Ann. N.Y. Acad. of Sciences, 302, 569-604 (1977).
Gravitational radiation from distant encounters and from head-on collisions of black holes: The zero-frequency limit
L. Smarr, Physical Review D15, 2069-2077 (1977).
Are There Geon Analogues in Sourceless Gauge-Field Theories?
S. Coleman and L. Smarr, Comm. Math. Phys., 56, 1-9 (1977).
Collision of Two Black Holes: Theoretical Framework
L. Smarr, A. Cadez, B. DeWitt, and K. Eppley, Physical Review D14, 2443-2452. (1976).
The Binary Pulsar — Physical Processes, Possible Companions, And Evolutionary Histories
L. Smarr and R. Blandford, Astrophysical Journal, 207, 574-588 (1976).
Mechanism for inducing synchronous rotation and small eccentricity in close binary systems
W.H. Press, L. Smarr, and P. Wiita, Astrophysical Journal Letters, 202, L135-L137 (1975).
The Structure of General Relativity with a Numerical Illustration: The Collision of Two Black Holes
L. Smarr Ph.D. Dissertation, University of Texas at Austin (1975). Ph.D. Advisor Bryce S. DeWitt (Deceased).
Maximally Slicing a Black Hole
F. Estabrook, H. Wahlquist, S. Christensen, B. DeWitt, L. Smarr and E. Tsiang, Physical Review D7, 2814-2817, (1973).
Surface Geometry Of Charged Rotating Black Holes
L. Smarr, Physical Review D7, 289-295. (1973).
